J3_5IB7_064

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CUUGACAUGC*GCACAG*CUUACG

Length

22 nucleotides

Bulged bases

5IB7|1|1G|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB7|1|1G|C|990
5IB7|1|1G|U|991
5IB7|1|1G|U|992
5IB7|1|1G|G|993
5IB7|1|1G|A|994
5IB7|1|1G|C|995
5IB7|1|1G|A|996
5IB7|1|1G|U|997
5IB7|1|1G|G|998
5IB7|1|1G|C|998|||A
*
5IB7|1|1G|G|1042
5IB7|1|1G|C|1043
5IB7|1|1G|A|1044
5IB7|1|1G|C|1045
5IB7|1|1G|A|1046
5IB7|1|1G|G|1047
*
5IB7|1|1G|C|1210
5IB7|1|1G|U|1211
5IB7|1|1G|U|1212
5IB7|1|1G|A|1213
5IB7|1|1G|C|1214
5IB7|1|1G|G|1215

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 5A

30S ribosomal protein S14 type Z