J3_5IB8_024

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

5IB8|1|14|G|2833, 5IB8|1|14|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IB8_024 not in the Motif Atlas

Homologous match to J3_7RQB_014

Geometric discrepancy: 0.1092

The information below is about J3_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_95952.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5IB8|1|14|C|2814
5IB8|1|14|C|2815
*
5IB8|1|14|G|2831
5IB8|1|14|U|2832
5IB8|1|14|G|2833
5IB8|1|14|G|2834
5IB8|1|14|A|2835
5IB8|1|14|U|2836
*
5IB8|1|14|A|2882
5IB8|1|14|A|2883
5IB8|1|14|U|2884
5IB8|1|14|C|2885
5IB8|1|14|G|2886

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain 55

50S ribosomal protein L17

Chain J5

50S ribosomal protein L32