J3_5IB8_030

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IB8_030 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1815

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

5IB8|1|1G|C|936
5IB8|1|1G|A|937
5IB8|1|1G|A|938
5IB8|1|1G|G|939
*
5IB8|1|1G|C|1344
5IB8|1|1G|U|1345
5IB8|1|1G|A|1346
5IB8|1|1G|G|1347
5IB8|1|1G|U|1348
5IB8|1|1G|A|1349
5IB8|1|1G|A|1350
*
5IB8|1|1G|U|1372
5IB8|1|1G|G|1373
5IB8|1|1G|A|1374
5IB8|1|1G|A|1375
5IB8|1|1G|U|1376
5IB8|1|1G|A|1377
5IB8|1|1G|C|1378
5IB8|1|1G|G|1379

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 3L

Transfer RNA; tRNA

Chain 62

30S ribosomal protein S7

Chain 82

30S ribosomal protein S9