J3_5IB8_050

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CAC*GUAAG*CGAGG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB8|1|1H|C|2789
5IB8|1|1H|A|2790
5IB8|1|1H|C|2791
*
5IB8|1|1H|G|2807
5IB8|1|1H|U|2808
5IB8|1|1H|A|2809
5IB8|1|1H|A|2810
5IB8|1|1H|G|2811
*
5IB8|1|1H|C|2889
5IB8|1|1H|G|2891
5IB8|1|1H|A|2892
5IB8|1|1H|G|2893
5IB8|1|1H|G|2894

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3