J3_5IB8_064
3D structure
- PDB id
- 5IB8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.13 Å
Loop
- Sequence
- GGUUUAAUUC*GAAGAACCUUAC*GGCGACAC
- Length
- 30 nucleotides
- Bulged bases
- 5IB8|1|1G|U|960, 5IB8|1|1G|A|975, 5IB8|1|1G|G|976, 5IB8|1|1G|A|978, 5IB8|1|1G|G|1224, 5IB8|1|1G|A|1227
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IB8|1|1G|G|953
5IB8|1|1G|G|954
5IB8|1|1G|U|955
5IB8|1|1G|U|956
5IB8|1|1G|U|957
5IB8|1|1G|A|958
5IB8|1|1G|A|959
5IB8|1|1G|U|960
5IB8|1|1G|U|961
5IB8|1|1G|C|962
*
5IB8|1|1G|G|973
5IB8|1|1G|A|974
5IB8|1|1G|A|975
5IB8|1|1G|G|976
5IB8|1|1G|A|977
5IB8|1|1G|A|978
5IB8|1|1G|C|979
5IB8|1|1G|C|980
5IB8|1|1G|U|981
5IB8|1|1G|U|982
5IB8|1|1G|A|983
5IB8|1|1G|C|984
*
5IB8|1|1G|G|1221
5IB8|1|1G|G|1222
5IB8|1|1G|C|1223
5IB8|1|1G|G|1224
5IB8|1|1G|A|1225
5IB8|1|1G|C|1226
5IB8|1|1G|A|1227
5IB8|1|1G|C|1228
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1A
- 30S ribosomal protein S10
- Chain 1L
- Transfer RNA; tRNA
- Chain 2L
- Transfer RNA; tRNA
- Chain 4A
- 30S ribosomal protein S13
- Chain 5A
- 30S ribosomal protein S14 type Z
- Chain AA
- 30S ribosomal protein S19
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