J3_5IB8_072
3D structure
- PDB id
- 5IB8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.13 Å
Loop
- Sequence
- CCCAUAG*CG*UCGG
- Length
- 13 nucleotides
- Bulged bases
- 5IB8|1|1J|A|13, 5IB8|1|1J|U|14, 5IB8|1|1J|C|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IB8_072 not in the Motif Atlas
- Geometric match to J3_7A0S_021
- Geometric discrepancy: 0.3026
- The information below is about J3_7A0S_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47324.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5IB8|1|1J|C|10
5IB8|1|1J|C|11
5IB8|1|1J|C|12
5IB8|1|1J|A|13
5IB8|1|1J|U|14
5IB8|1|1J|A|15
5IB8|1|1J|G|16
*
5IB8|1|1J|C|68
5IB8|1|1J|G|69
*
5IB8|1|1J|U|107
5IB8|1|1J|C|108
5IB8|1|1J|G|109
5IB8|1|1J|G|110
Current chains
- Chain 1J
- 5S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 65
- 50S ribosomal protein L18
- Chain D5
- 50S ribosomal protein L25
- Chain E5
- 50S ribosomal protein L27
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