J3_5IBB_019

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

5IBB|1|14|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IBB_019 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0533

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5IBB|1|14|C|1306
5IBB|1|14|A|1307
5IBB|1|14|A|1308
5IBB|1|14|G|1309
*
5IBB|1|14|C|1605
5IBB|1|14|G|1606
5IBB|1|14|C|1607
5IBB|1|14|A|1608
5IBB|1|14|A|1609
5IBB|1|14|A|1610
5IBB|1|14|C|1611
*
5IBB|1|14|G|1620
5IBB|1|14|U|1621
5IBB|1|14|G|1622

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L34