J3_5IBB_024

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

5IBB|1|14|G|2833, 5IBB|1|14|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IBB_024 not in the Motif Atlas

Homologous match to J3_7RQB_014

Geometric discrepancy: 0.0907

The information below is about J3_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_95952.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5IBB|1|14|C|2814
5IBB|1|14|C|2815
*
5IBB|1|14|G|2831
5IBB|1|14|U|2832
5IBB|1|14|G|2833
5IBB|1|14|G|2834
5IBB|1|14|A|2835
5IBB|1|14|U|2836
*
5IBB|1|14|A|2882
5IBB|1|14|A|2883
5IBB|1|14|U|2884
5IBB|1|14|C|2885
5IBB|1|14|G|2886

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain 55

50S ribosomal protein L17

Chain J5

50S ribosomal protein L32