J3_5IBB_032
3D structure
- PDB id
- 5IBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 5IBB|1|1G|A|975, 5IBB|1|1G|G|976, 5IBB|1|1G|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IBB_032 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1297
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5IBB|1|1G|U|955
5IBB|1|1G|U|956
5IBB|1|1G|U|957
5IBB|1|1G|A|958
5IBB|1|1G|A|959
5IBB|1|1G|U|960
5IBB|1|1G|U|961
5IBB|1|1G|C|962
*
5IBB|1|1G|G|973
5IBB|1|1G|A|974
5IBB|1|1G|A|975
5IBB|1|1G|G|976
5IBB|1|1G|A|977
5IBB|1|1G|A|978
5IBB|1|1G|C|979
5IBB|1|1G|C|980
5IBB|1|1G|U|981
5IBB|1|1G|U|982
5IBB|1|1G|A|983
5IBB|1|1G|C|984
*
5IBB|1|1G|G|1221
5IBB|1|1G|G|1222
5IBB|1|1G|C|1223
5IBB|1|1G|G|1224
5IBB|1|1G|A|1225
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1A
- 30S ribosomal protein S10
- Chain 1L
- Transfer RNA; tRNA
- Chain 4A
- 30S ribosomal protein S13
- Chain 5A
- 30S ribosomal protein S14 type Z
- Chain AA
- 30S ribosomal protein S19
Coloring options: