J3_5IMQ_001

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCUAAG*UAGGAAUCUUC*GAGC

Length

22 nucleotides

Bulged bases

5IMQ|1|A|C|48, 5IMQ|1|A|A|51, 5IMQ|1|A|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|A|G|46
5IMQ|1|A|C|47
5IMQ|1|A|C|48
5IMQ|1|A|U|49
5IMQ|1|A|A|50
5IMQ|1|A|A|51
5IMQ|1|A|G|52
*
5IMQ|1|A|U|359
5IMQ|1|A|A|360
5IMQ|1|A|G|361
5IMQ|1|A|G|362
5IMQ|1|A|A|363
5IMQ|1|A|A|364
5IMQ|1|A|U|365
5IMQ|1|A|C|366
5IMQ|1|A|U|367
5IMQ|1|A|U|368
5IMQ|1|A|C|369
*
5IMQ|1|A|G|392
5IMQ|1|A|A|393
5IMQ|1|A|G|394
5IMQ|1|A|C|395

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Elongation factor 4

Chain P

30S ribosomal protein S12

Chain T

30S ribosomal protein S16