J3_5IMQ_014
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAG*CGAAC*GAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IMQ_014 not in the Motif Atlas
- Homologous match to J3_7RQB_005
- Geometric discrepancy: 0.1828
- The information below is about J3_7RQB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.4
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
5IMQ|1|D|C|698
5IMQ|1|D|A|699
5IMQ|1|D|G|700
*
5IMQ|1|D|C|732
5IMQ|1|D|G|733
5IMQ|1|D|A|734
5IMQ|1|D|A|735
5IMQ|1|D|C|736
*
5IMQ|1|D|G|760
5IMQ|1|D|A|761
5IMQ|1|D|U|762
5IMQ|1|D|G|763
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain a
- 50S ribosomal protein L2
Coloring options: