J3_5IMQ_018

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUC*GAGC*GUAGAAG

Length

14 nucleotides

Bulged bases

5IMQ|1|D|G|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|C|2295
5IMQ|1|D|U|2296
5IMQ|1|D|C|2297
*
5IMQ|1|D|G|2321
5IMQ|1|D|A|2322
5IMQ|1|D|G|2323
5IMQ|1|D|C|2324
*
5IMQ|1|D|G|2331
5IMQ|1|D|U|2332
5IMQ|1|D|A|2333
5IMQ|1|D|G|2334
5IMQ|1|D|A|2335
5IMQ|1|D|A|2336
5IMQ|1|D|G|2337

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain E

5S ribosomal RNA; 5S rRNA

Chain k

50S ribosomal protein L18

Chain s

50S ribosomal protein L27