J3_5IMQ_020

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GUGGAUG*CAAUCG

Length

15 nucleotides

Bulged bases

5IMQ|1|D|G|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|C|2814
5IMQ|1|D|C|2815
*
5IMQ|1|D|G|2831
5IMQ|1|D|U|2832
5IMQ|1|D|G|2833
5IMQ|1|D|G|2834
5IMQ|1|D|A|2835
5IMQ|1|D|U|2836
5IMQ|1|D|G|2837
*
5IMQ|1|D|C|2881
5IMQ|1|D|A|2882
5IMQ|1|D|A|2883
5IMQ|1|D|U|2884
5IMQ|1|D|C|2885
5IMQ|1|D|G|2886

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain j

50S ribosomal protein L17

Chain w

50S ribosomal protein L32