J3_5IMQ_021
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 5IMQ|1|E|U|14, 5IMQ|1|E|C|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5IMQ_021 not in the Motif Atlas
- Homologous match to J3_7RQB_015
- Geometric discrepancy: 0.4525
- The information below is about J3_7RQB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08462.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5IMQ|1|E|C|11
5IMQ|1|E|C|12
5IMQ|1|E|A|13
5IMQ|1|E|U|14
5IMQ|1|E|A|15
5IMQ|1|E|G|16
*
5IMQ|1|E|C|68
5IMQ|1|E|G|69
*
5IMQ|1|E|U|107
5IMQ|1|E|C|108
5IMQ|1|E|G|109
Current chains
- Chain E
- 5S ribosomal RNA
Nearby chains
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain i
- 50S ribosomal protein L16
- Chain k
- 50S ribosomal protein L18
- Chain r
- 50S ribosomal protein L25
- Chain s
- 50S ribosomal protein L27
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