J3_5IMQ_032

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

5IMQ|1|D|A|71, 5IMQ|1|D|A|73, 5IMQ|1|D|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IMQ_032 not in the Motif Atlas

Homologous match to J3_9DFE_004

Geometric discrepancy: 0.3028

The information below is about J3_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01004.1

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

10

Unit IDs

5IMQ|1|D|A|56
5IMQ|1|D|C|57
*
5IMQ|1|D|G|70
5IMQ|1|D|A|71
5IMQ|1|D|U|72
5IMQ|1|D|A|73
5IMQ|1|D|A|74
5IMQ|1|D|G|75
5IMQ|1|D|C|76
*
5IMQ|1|D|G|110
5IMQ|1|D|A|111
5IMQ|1|D|U|112
5IMQ|1|D|G|113
5IMQ|1|D|U|114

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L23

Chain t

50S ribosomal protein L29

Chain y

50S ribosomal protein L34