J3_5IMQ_033

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAGCUA*UAGGA*UAACCGAG

Length

20 nucleotides

Bulged bases

5IMQ|1|D|G|686, 5IMQ|1|D|A|789, 5IMQ|1|D|C|790, 5IMQ|1|D|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|C|683
5IMQ|1|D|G|684
5IMQ|1|D|A|685
5IMQ|1|D|G|686
5IMQ|1|D|C|687
5IMQ|1|D|U|688
5IMQ|1|D|A|689
*
5IMQ|1|D|U|773
5IMQ|1|D|A|774
5IMQ|1|D|G|775
5IMQ|1|D|G|776
5IMQ|1|D|A|777
*
5IMQ|1|D|U|787
5IMQ|1|D|A|788
5IMQ|1|D|A|789
5IMQ|1|D|C|790
5IMQ|1|D|C|791
5IMQ|1|D|G|792
5IMQ|1|D|A|793
5IMQ|1|D|G|794

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2

Chain c

50S ribosomal protein L4

Chain o

50S ribosomal protein L22

Chain y

50S ribosomal protein L34