J3_5IMQ_034

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

5IMQ|1|D|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IMQ_034 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.3561

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5IMQ|1|D|C|1298
5IMQ|1|D|G|1299
5IMQ|1|D|U|1300
5IMQ|1|D|A|1301
5IMQ|1|D|A|1302
5IMQ|1|D|G|1303
*
5IMQ|1|D|C|1625
5IMQ|1|D|G|1626
5IMQ|1|D|G|1627
*
5IMQ|1|D|U|1639
5IMQ|1|D|C|1640
5IMQ|1|D|A|1641
5IMQ|1|D|G|1642

Current chains

Chain D

23S ribosomal RNA

Nearby chains