J3_5IQR_001

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5IQR|1|1|U|686, 5IQR|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IQR_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0923

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5IQR|1|1|U|683
5IQR|1|1|G|684
5IQR|1|1|A|685
5IQR|1|1|U|686
5IQR|1|1|C|687
5IQR|1|1|U|688
5IQR|1|1|A|689
*
5IQR|1|1|U|773
5IQR|1|1|G|774
5IQR|1|1|G|775
*
5IQR|1|1|C|791
5IQR|1|1|A|792
5IQR|1|1|A|793
5IQR|1|1|A|794

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain d

50S ribosomal protein L34