J3_5IQR_002

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IQR_002 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0964

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5IQR|1|1|C|698
5IQR|1|1|A|699
5IQR|1|1|G|700
*
5IQR|1|1|C|732
5IQR|1|1|G|733
5IQR|1|1|A|734
5IQR|1|1|A|735
5IQR|1|1|C|736
*
5IQR|1|1|G|760
5IQR|1|1|A|761
5IQR|1|1|U|762
5IQR|1|1|G|763

Current chains

Chain 1

LSU rRNA

Nearby chains

Chain B

50S ribosomal protein L2