J3_5IQR_011

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IQR_011 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1011

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5IQR|1|2|C|936
5IQR|1|2|A|937
5IQR|1|2|A|938
5IQR|1|2|G|939
*
5IQR|1|2|C|1344
5IQR|1|2|U|1345
5IQR|1|2|A|1346
5IQR|1|2|G|1347
5IQR|1|2|U|1348
5IQR|1|2|A|1349
5IQR|1|2|A|1350
*
5IQR|1|2|U|1372
5IQR|1|2|G|1373
5IQR|1|2|A|1374
5IQR|1|2|A|1375
5IQR|1|2|U|1376
5IQR|1|2|A|1377
5IQR|1|2|C|1378
5IQR|1|2|G|1379

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9