J3_5IQR_033

3D structure

PDB id

5IQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5IQR|1|2|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5IQR_033 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1162

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5IQR|1|2|C|990
5IQR|1|2|U|991
5IQR|1|2|U|992
5IQR|1|2|G|993
5IQR|1|2|A|994
5IQR|1|2|C|995
5IQR|1|2|A|996
5IQR|1|2|U|997
*
5IQR|1|2|A|1044
5IQR|1|2|C|1045
5IQR|1|2|A|1046
5IQR|1|2|G|1047
*
5IQR|1|2|C|1210
5IQR|1|2|U|1211
5IQR|1|2|U|1212
5IQR|1|2|A|1213
5IQR|1|2|C|1214
5IQR|1|2|G|1215

Current chains

Chain 2

SSU rRNA

Nearby chains

Chain s

30S ribosomal protein S14