J3_5IT9_011

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUG*UGUC*GAUAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|2|G|1291
5IT9|1|2|U|1292
5IT9|1|2|G|1293
*
5IT9|1|2|U|1302
5IT9|1|2|G|1303
5IT9|1|2|U|1304
5IT9|1|2|C|1305
*
5IT9|1|2|G|1317
5IT9|1|2|A|1318
5IT9|1|2|U|1319
5IT9|1|2|A|1320
5IT9|1|2|A|1321
5IT9|1|2|C|1322

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uS2

Chain C

Ribosomal protein uS5

Chain R

Ribosomal protein eS17