J3_5IT9_016

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCCUUG*CAU

Length

26 nucleotides

Bulged bases

5IT9|1|2|A|216, 5IT9|1|2|C|239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|2|A|212
5IT9|1|2|G|213
5IT9|1|2|A|214
5IT9|1|2|U|215
5IT9|1|2|A|216
5IT9|1|2|A|217
5IT9|1|2|A|218
5IT9|1|2|A|219
5IT9|1|2|A|220
5IT9|1|2|A|221
5IT9|1|2|U|222
5IT9|1|2|C|223
5IT9|1|2|A|224
5IT9|1|2|A|225
5IT9|1|2|U|226
5IT9|1|2|G|227
*
5IT9|1|2|C|236
5IT9|1|2|U|237
5IT9|1|2|C|238
5IT9|1|2|C|239
5IT9|1|2|U|240
5IT9|1|2|U|241
5IT9|1|2|G|242
*
5IT9|1|2|C|249
5IT9|1|2|A|250
5IT9|1|2|U|251

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain G

Ribosomal protein eS6

Chain L

Ribosomal protein uS17