J3_5IT9_017

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUCAGUAUU*AAGACUAACUACUG*CAUU

Length

27 nucleotides

Bulged bases

5IT9|1|2|C|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IT9|1|2|A|880
5IT9|1|2|U|881
5IT9|1|2|C|882
5IT9|1|2|A|883
5IT9|1|2|G|884
5IT9|1|2|U|885
5IT9|1|2|A|886
5IT9|1|2|U|887
5IT9|1|2|U|888
*
5IT9|1|2|A|922
5IT9|1|2|A|923
5IT9|1|2|G|924
5IT9|1|2|A|925
5IT9|1|2|C|926
5IT9|1|2|U|927
5IT9|1|2|A|928
5IT9|1|2|A|929
5IT9|1|2|C|930
5IT9|1|2|U|931
5IT9|1|2|A|932
5IT9|1|2|C|933
5IT9|1|2|U|934
5IT9|1|2|G|935
*
5IT9|1|2|C|942
5IT9|1|2|A|943
5IT9|1|2|U|944
5IT9|1|2|U|945

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein eS1

Chain N

Ribosomal protein uS15

Chain O

Ribosomal protein uS14

Chain a

Ribosomal protein eS26