J3_5IT9_019
3D structure
- PDB id
- 5IT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUUAAUUUG*CGGGGAAACUCAC*GGCCG
- Length
- 27 nucleotides
- Bulged bases
- 5IT9|1|2|G|1198, 5IT9|1|2|G|1200, 5IT9|1|2|A|1202
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5IT9|1|2|C|1179
5IT9|1|2|U|1180
5IT9|1|2|U|1181
5IT9|1|2|A|1182
5IT9|1|2|A|1183
5IT9|1|2|U|1184
5IT9|1|2|U|1185
5IT9|1|2|U|1186
5IT9|1|2|G|1187
*
5IT9|1|2|C|1196
5IT9|1|2|G|1197
5IT9|1|2|G|1198
5IT9|1|2|G|1199
5IT9|1|2|G|1200
5IT9|1|2|A|1201
5IT9|1|2|A|1202
5IT9|1|2|A|1203
5IT9|1|2|C|1204
5IT9|1|2|U|1205
5IT9|1|2|C|1206
5IT9|1|2|A|1207
5IT9|1|2|C|1208
*
5IT9|1|2|G|1452
5IT9|1|2|G|1453
5IT9|1|2|C|1454
5IT9|1|2|C|1455
5IT9|1|2|G|1456
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain P
- Ribosomal protein uS19
- Chain Q
- Ribosomal protein uS9
- Chain S
- Ribosomal protein uS13
- Chain U
- Ribosomal protein uS10
- Chain d
- Ribosomal protein eS29
- Chain f
- Ribosomal protein eS31
- Chain i
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
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