J3_5J30_001

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J30_001 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.0959

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5J30|1|QA|G|46
5J30|1|QA|C|47
*
5J30|1|QA|G|361
5J30|1|QA|G|362
5J30|1|QA|A|363
5J30|1|QA|A|364
5J30|1|QA|U|365
5J30|1|QA|C|366
5J30|1|QA|U|367
*
5J30|1|QA|A|393
5J30|1|QA|G|394
5J30|1|QA|C|395

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain YI

50S ribosomal protein L9