J3_5J30_009

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J30_009 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.1762

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J30|1|QA|G|1002
5J30|1|QA|G|1003
5J30|1|QA|A|1004
5J30|1|QA|A|1005
5J30|1|QA|C|1006
*
5J30|1|QA|G|1023
5J30|1|QA|G|1024
5J30|1|QA|U|1025
5J30|1|QA|G|1026
5J30|1|QA|C|1027
5J30|1|QA|C|1028
*
5J30|1|QA|G|1033
5J30|1|QA|G|1034
5J30|1|QA|A|1035
5J30|1|QA|G|1036
5J30|1|QA|C|1037
5J30|1|QA|C|1038

Current chains

Chain QA

16S rRNA

Nearby chains