J3_5J30_028
3D structure
- PDB id
- 5J30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 5J30|1|RA|G|2833, 5J30|1|RA|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J30_028 not in the Motif Atlas
- Homologous match to J3_7RQB_014
- Geometric discrepancy: 0.0436
- The information below is about J3_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_95952.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J30|1|RA|C|2814
5J30|1|RA|C|2815
*
5J30|1|RA|G|2831
5J30|1|RA|U|2832
5J30|1|RA|G|2833
5J30|1|RA|G|2834
5J30|1|RA|A|2835
5J30|1|RA|U|2836
*
5J30|1|RA|A|2882
5J30|1|RA|A|2883
5J30|1|RA|U|2884
5J30|1|RA|C|2885
5J30|1|RA|G|2886
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R5
- 50S ribosomal protein L32
- Chain RE
- 50S ribosomal protein L3
- Chain RR
- 50S ribosomal protein L17
Coloring options: