J3_5J30_044
3D structure
- PDB id
- 5J30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S termination complex containing E. coli RF1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 5J30|1|YA|U|273|||B
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J30_044 not in the Motif Atlas
- Homologous match to J3_7RQB_003
- Geometric discrepancy: 0.0535
- The information below is about J3_7RQB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97921.1
- Basepair signature
- cWW-F-F-tSH-tWH-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J30|1|YA|U|269
5J30|1|YA|A|270
5J30|1|YA|A|271
5J30|1|YA|A|272|||A
5J30|1|YA|C|272|||B
*
5J30|1|YA|G|272|||V
5J30|1|YA|G|272|||W
5J30|1|YA|G|272|||X
5J30|1|YA|U|272|||Y
5J30|1|YA|C|272|||Z
5J30|1|YA|G|273|||A
5J30|1|YA|U|273|||B
5J30|1|YA|G|273|||C
*
5J30|1|YA|C|366
5J30|1|YA|G|370
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YI
- 50S ribosomal protein L9
Coloring options: