J3_5J3C_018

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J3C_018 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0444

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5J3C|1|RA|C|698
5J3C|1|RA|A|699
5J3C|1|RA|G|700
*
5J3C|1|RA|C|732
5J3C|1|RA|G|733
5J3C|1|RA|A|734
5J3C|1|RA|A|735
5J3C|1|RA|C|736
*
5J3C|1|RA|G|760
5J3C|1|RA|A|761
5J3C|1|RA|U|762
5J3C|1|RA|G|763

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2