J3_5J4B_016

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAACC*GGGUGCC*GGAGCC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4B|1|1a|G|1002
5J4B|1|1a|G|1003
5J4B|1|1a|A|1004
5J4B|1|1a|A|1005
5J4B|1|1a|C|1006
5J4B|1|1a|C|1007
*
5J4B|1|1a|G|1022
5J4B|1|1a|G|1023
5J4B|1|1a|G|1024
5J4B|1|1a|U|1025
5J4B|1|1a|G|1026
5J4B|1|1a|C|1027
5J4B|1|1a|C|1028
*
5J4B|1|1a|G|1033
5J4B|1|1a|G|1034
5J4B|1|1a|A|1035
5J4B|1|1a|G|1036
5J4B|1|1a|C|1037
5J4B|1|1a|C|1038

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains