J3_5J4B_063
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUC*GAG*UAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 5J4B|1|2A|G|2334, 5J4B|1|2A|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J4B_063 not in the Motif Atlas
- Homologous match to J3_9DFE_016
- Geometric discrepancy: 0.0836
- The information below is about J3_9DFE_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5J4B|1|2A|C|2295
5J4B|1|2A|U|2296
5J4B|1|2A|C|2297
*
5J4B|1|2A|G|2321
5J4B|1|2A|A|2322
5J4B|1|2A|G|2323
*
5J4B|1|2A|U|2332
5J4B|1|2A|A|2333
5J4B|1|2A|G|2334
5J4B|1|2A|A|2335
5J4B|1|2A|A|2336
5J4B|1|2A|G|2337
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 2B
- 5S ribosomal RNA; 5S rRNA
- Chain 2G
- 50S ribosomal protein L5
- Chain 2S
- 50S ribosomal protein L18
- Chain 2x
- Transfer RNA; tRNA
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