J3_5J4B_071

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCUUG*CAG*CUUACGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4B|1|2a|C|989
5J4B|1|2a|C|990
5J4B|1|2a|U|991
5J4B|1|2a|U|992
5J4B|1|2a|G|993
*
5J4B|1|2a|C|1045
5J4B|1|2a|A|1046
5J4B|1|2a|G|1047
*
5J4B|1|2a|C|1210
5J4B|1|2a|U|1211
5J4B|1|2a|U|1212
5J4B|1|2a|A|1213
5J4B|1|2a|C|1214
5J4B|1|2a|G|1215
5J4B|1|2a|G|1216

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z