J3_5J4D_007
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 5J4D|1|A|A|975, 5J4D|1|A|G|976, 5J4D|1|A|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J4D_007 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0537
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5J4D|1|A|U|955
5J4D|1|A|U|956
5J4D|1|A|U|957
5J4D|1|A|A|958
5J4D|1|A|A|959
5J4D|1|A|U|960
5J4D|1|A|U|961
5J4D|1|A|C|962
*
5J4D|1|A|G|973
5J4D|1|A|A|974
5J4D|1|A|A|975
5J4D|1|A|G|976
5J4D|1|A|A|977
5J4D|1|A|A|978
5J4D|1|A|C|979
5J4D|1|A|C|980
5J4D|1|A|U|981
5J4D|1|A|U|982
5J4D|1|A|A|983
5J4D|1|A|C|984
*
5J4D|1|A|G|1221
5J4D|1|A|G|1222
5J4D|1|A|C|1223
5J4D|1|A|G|1224
5J4D|1|A|A|1225
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain BB
- 30S ribosomal protein S19
- Chain JA
- Peptide chain release factor 1
- Chain SA
- 30S ribosomal protein S10
- Chain VA
- 30S ribosomal protein S13
- Chain WA
- 30S ribosomal protein S14 type Z
Coloring options: