J3_5J4D_016

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAAAC*GGGG*CGU*GC*G

Length

15 nucleotides

Bulged bases

5J4D|1|B|U|271|||D

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4D|1|B|U|269
5J4D|1|B|A|270|||A
5J4D|1|B|A|270|||B
5J4D|1|B|A|270|||C
5J4D|1|B|C|270|||D
*
5J4D|1|B|G|270|||X
5J4D|1|B|G|270|||Y
5J4D|1|B|G|270|||Z
5J4D|1|B|G|271
*
5J4D|1|B|C|366
5J4D|1|B|G|370
5J4D|1|B|U|271|||D
*
5J4D|1|B|G|271
5J4D|1|B|C|366
*
5J4D|1|B|G|370

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L9