J3_5J4D_025

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACGG*CCGGUAAG*CGAGG

Length

18 nucleotides

Bulged bases

5J4D|1|B|A|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4D|1|B|C|2789
5J4D|1|B|A|2790
5J4D|1|B|C|2791
5J4D|1|B|G|2792
5J4D|1|B|G|2793
*
5J4D|1|B|C|2803
5J4D|1|B|C|2804
5J4D|1|B|G|2805
5J4D|1|B|G|2807
5J4D|1|B|U|2808
5J4D|1|B|A|2809
5J4D|1|B|A|2810
5J4D|1|B|G|2811
*
5J4D|1|B|C|2889
5J4D|1|B|G|2891
5J4D|1|B|A|2892
5J4D|1|B|G|2893
5J4D|1|B|G|2894

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L3