J3_5J4D_028

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J4D_028 not in the Motif Atlas

Geometric match to J3_4LFB_010

Geometric discrepancy: 0.0681

The information below is about J3_4LFB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5J4D|1|FB|G|46
5J4D|1|FB|C|47
*
5J4D|1|FB|G|361
5J4D|1|FB|G|362
5J4D|1|FB|A|363
5J4D|1|FB|A|364
5J4D|1|FB|U|365
5J4D|1|FB|C|366
5J4D|1|FB|U|367
*
5J4D|1|FB|A|393
5J4D|1|FB|G|394
5J4D|1|FB|C|395

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S16

Chain J

50S ribosomal protein L9

Chain ZC

30S ribosomal protein S12