J3_5J4D_038

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J4D_038 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1928

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5J4D|1|FB|U|1073
5J4D|1|FB|G|1074
*
5J4D|1|FB|U|1083
5J4D|1|FB|G|1084
5J4D|1|FB|U|1085
5J4D|1|FB|U|1086
5J4D|1|FB|G|1087
*
5J4D|1|FB|C|1098
5J4D|1|FB|G|1099
5J4D|1|FB|C|1100
5J4D|1|FB|A|1101
5J4D|1|FB|A|1102

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain PC

30S ribosomal protein S2

Chain SC

30S ribosomal protein S5