J3_5J4D_045

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J4D_045 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0748

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5J4D|1|GB|C|698
5J4D|1|GB|A|699
5J4D|1|GB|G|700
*
5J4D|1|GB|C|732
5J4D|1|GB|G|733
5J4D|1|GB|A|734
5J4D|1|GB|A|735
5J4D|1|GB|C|736
*
5J4D|1|GB|G|760
5J4D|1|GB|A|761
5J4D|1|GB|U|762
5J4D|1|GB|G|763

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain JB

50S ribosomal protein L2