J3_5J5B_039

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5J5B|1|DA|U|686, 5J5B|1|DA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J5B_039 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0307

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5J5B|1|DA|U|683
5J5B|1|DA|G|684
5J5B|1|DA|A|685
5J5B|1|DA|U|686
5J5B|1|DA|C|687
5J5B|1|DA|U|688
5J5B|1|DA|A|689
*
5J5B|1|DA|U|773
5J5B|1|DA|G|774
5J5B|1|DA|G|775
*
5J5B|1|DA|C|791
5J5B|1|DA|A|792
5J5B|1|DA|A|793
5J5B|1|DA|A|794

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L34

Chain DC

50S ribosomal protein L2