J3_5J5B_055

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5J5B|1|AA|U|1212, 5J5B|1|AA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J5B_055 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.0244

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5J5B|1|AA|C|990
5J5B|1|AA|U|991
5J5B|1|AA|U|992
5J5B|1|AA|G|993
5J5B|1|AA|A|994
5J5B|1|AA|C|995
5J5B|1|AA|A|996
5J5B|1|AA|U|997
*
5J5B|1|AA|A|1044
5J5B|1|AA|C|1045
5J5B|1|AA|A|1046
5J5B|1|AA|G|1047
*
5J5B|1|AA|C|1210
5J5B|1|AA|U|1211
5J5B|1|AA|U|1212
5J5B|1|AA|A|1213
5J5B|1|AA|C|1214
5J5B|1|AA|G|1215

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14