J3_5J5B_061
3D structure
- PDB id
- 5J5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the WT E coli ribosome bound to tetracycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 5J5B|1|BA|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J5B_061 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.0368
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J5B|1|BA|U|1116
5J5B|1|BA|A|1117
5J5B|1|BA|U|1118
*
5J5B|1|BA|A|1155
5J5B|1|BA|G|1156
5J5B|1|BA|A|1157
5J5B|1|BA|C|1158
5J5B|1|BA|U|1159
5J5B|1|BA|G|1160
5J5B|1|BA|C|1161
*
5J5B|1|BA|G|1175
5J5B|1|BA|A|1176
5J5B|1|BA|G|1177
5J5B|1|BA|G|1178
5J5B|1|BA|A|1179
5J5B|1|BA|A|1180
5J5B|1|BA|G|1181
5J5B|1|BA|G|1182
5J5B|1|BA|U|1183
5J5B|1|BA|G|1184
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BB
- 30S ribosomal protein S2
- Chain BG
- 30S ribosomal protein S7
- Chain BI
- 30S ribosomal protein S9
- Chain BJ
- 30S ribosomal protein S10
- Chain BN
- 30S ribosomal protein S14
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