3D structure

PDB id
5J7L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AC*GAUAAGC*GAUUU
Length
14 nucleotides
Bulged bases
5J7L|1|CA|A|74
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5J7L_023 not in the Motif Atlas
Homologous match to J3_5J7L_037
Geometric discrepancy: 0.0644
The information below is about J3_5J7L_037
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_35667.2
Basepair signature
cWW-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

5J7L|1|CA|A|56
5J7L|1|CA|C|57
*
5J7L|1|CA|G|70
5J7L|1|CA|A|71
5J7L|1|CA|U|72
5J7L|1|CA|A|73
5J7L|1|CA|A|74
5J7L|1|CA|G|75
5J7L|1|CA|C|76
*
5J7L|1|CA|G|110
5J7L|1|CA|A|111
5J7L|1|CA|U|112
5J7L|1|CA|U|113
5J7L|1|CA|U|114

Current chains

Chain CA
23S rRNA

Nearby chains

Chain C3
50S ribosomal protein L34
Chain CU
50S ribosomal protein L23
Chain CZ
50S ribosomal protein L29

Coloring options:


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