J3_5J7L_024

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5J7L|1|CA|U|686, 5J7L|1|CA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J7L_024 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0756

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5J7L|1|CA|U|683
5J7L|1|CA|G|684
5J7L|1|CA|A|685
5J7L|1|CA|U|686
5J7L|1|CA|C|687
5J7L|1|CA|U|688
5J7L|1|CA|A|689
*
5J7L|1|CA|U|773
5J7L|1|CA|G|774
5J7L|1|CA|G|775
*
5J7L|1|CA|C|791
5J7L|1|CA|A|792
5J7L|1|CA|A|793
5J7L|1|CA|A|794

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CC

50S ribosomal protein L2