J3_5J7L_033

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CC*GAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J7L_033 not in the Motif Atlas

Homologous match to J3_5J7L_047

Geometric discrepancy: 0.0552

The information below is about J3_5J7L_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30104.1

Basepair signature

cWW-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5J7L|1|CA|C|2789
5J7L|1|CA|U|2790
5J7L|1|CA|G|2791
*
5J7L|1|CA|C|2805
5J7L|1|CA|C|2806
*
5J7L|1|CA|G|2892
5J7L|1|CA|A|2893
5J7L|1|CA|G|2894

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein L3