J3_5J7L_048

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

5J7L|1|DA|U|2833, 5J7L|1|DA|A|2835, 5J7L|1|DA|U|2884||A, 5J7L|1|DA|G|2885||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5J7L|1|DA|G|2812
5J7L|1|DA|A|2813
5J7L|1|DA|A|2814
5J7L|1|DA|C|2815
*
5J7L|1|DA|G|2831
5J7L|1|DA|U|2832
5J7L|1|DA|U|2833
5J7L|1|DA|G|2834
5J7L|1|DA|A|2835
5J7L|1|DA|U|2836
*
5J7L|1|DA|A|2882
5J7L|1|DA|A|2883
5J7L|1|DA|U|2884||A
5J7L|1|DA|G|2885||A
5J7L|1|DA|A|2886||A
5J7L|1|DA|A|2887||A
5J7L|1|DA|C|2888||A

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DO

50S ribosomal protein L17

Chain DT

50S ribosomal protein L22