J3_5J7L_052

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5J7L|1|AA|C|936
5J7L|1|AA|A|937
5J7L|1|AA|A|938
5J7L|1|AA|G|939
*
5J7L|1|AA|C|1344
5J7L|1|AA|U|1345
5J7L|1|AA|A|1346
5J7L|1|AA|G|1347
5J7L|1|AA|U|1348
5J7L|1|AA|A|1349
5J7L|1|AA|A|1350
*
5J7L|1|AA|U|1372
5J7L|1|AA|G|1373
5J7L|1|AA|A|1374
5J7L|1|AA|A|1375
5J7L|1|AA|U|1376
5J7L|1|AA|A|1377
5J7L|1|AA|C|1378
5J7L|1|AA|G|1379

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9