J3_5J7L_059

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5J7L|1|BA|U|1212, 5J7L|1|BA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J7L_059 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.0216

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5J7L|1|BA|C|990
5J7L|1|BA|U|991
5J7L|1|BA|U|992
5J7L|1|BA|G|993
5J7L|1|BA|A|994
5J7L|1|BA|C|995
5J7L|1|BA|A|996
5J7L|1|BA|U|997
*
5J7L|1|BA|A|1044
5J7L|1|BA|C|1045
5J7L|1|BA|A|1046
5J7L|1|BA|G|1047
*
5J7L|1|BA|C|1210
5J7L|1|BA|U|1211
5J7L|1|BA|U|1212
5J7L|1|BA|A|1213
5J7L|1|BA|C|1214
5J7L|1|BA|G|1215

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BN

30S ribosomal protein S14