J3_5J7L_063

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5J7L|1|CA|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J7L_063 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0195

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5J7L|1|CA|G|297
5J7L|1|CA|G|298
5J7L|1|CA|A|299
5J7L|1|CA|A|300
5J7L|1|CA|G|301
*
5J7L|1|CA|C|316
5J7L|1|CA|G|317
5J7L|1|CA|C|318
5J7L|1|CA|G|319
5J7L|1|CA|A|320
5J7L|1|CA|U|321
5J7L|1|CA|A|322
5J7L|1|CA|C|323
5J7L|1|CA|A|324
5J7L|1|CA|G|325
*
5J7L|1|CA|C|337
5J7L|1|CA|G|338
5J7L|1|CA|U|339
5J7L|1|CA|A|340
5J7L|1|CA|C|341

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CV

50S ribosomal protein L24