J3_5J7L_066

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

5J7L|1|DA|A|504, 5J7L|1|DA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5J7L|1|DA|G|30
5J7L|1|DA|C|31
*
5J7L|1|DA|G|474
5J7L|1|DA|C|475
5J7L|1|DA|G|476
5J7L|1|DA|A|477
5J7L|1|DA|A|478
5J7L|1|DA|A|479
5J7L|1|DA|A|480
5J7L|1|DA|G|481
5J7L|1|DA|A|482
5J7L|1|DA|A|483
5J7L|1|DA|C|484
*
5J7L|1|DA|G|496
5J7L|1|DA|A|497
5J7L|1|DA|G|498
5J7L|1|DA|U|499
5J7L|1|DA|G|500
5J7L|1|DA|A|501
5J7L|1|DA|A|502
5J7L|1|DA|A|503
5J7L|1|DA|A|504
5J7L|1|DA|A|505
5J7L|1|DA|G|506
5J7L|1|DA|A|507
5J7L|1|DA|A|508
5J7L|1|DA|C|509
5J7L|1|DA|C|510

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DR

50S ribosomal protein L20

Chain DT

50S ribosomal protein L22

Chain DV

50S ribosomal protein L24